Mukhopadhyay, C.S.*, Singh, K., Kashyap N., Sandhu Y. & Singh, S. (2020). SWOT Analysis to Identify Important Factors Influencing Dairy Farming Practices in Punjab. Agric Res J., 57(5): 769-778. DOI No. 10.5958/2395-146X.2020.00112.X (NAAS 2022: 5.44)
Tewari, S. & Mukhopadhyay, C. S. (2022). Dairy farm data recording impact analysis on socio-economic aspects of business Pashudhan Praharee. Published online on 17th March 2022. URL: http://www.pashudhanpraharee.com/
Mukhopadhyay, C. S. & Kaur, B. (2021). Kheti bari da Bhavik: Smart Kheti-bari (In Punjabi). Vaigyanik Pashupalan. 16(1), 13-14.
Choudhary, R. K. & Zhao, F-Q. (2021). Editorial: Re-Evaluation of Milk Components & Stem Cells. Acta Scientific Veterinary Sciences 3(1), 01-02. (IF-0.581).
Sharma, P. & Choudhary, R K. (2021). Pregnancy diagnosis is key for the better management of dairy farms. Vet Alumnus 43(1&2): 22-24.
Kashyap N. & Deshmukh, B. (2020). Efficient poultry farming with bio-security measures. Poultry World; 05; 20-22.
Kashyap N., Deshmukh, B. & Bansal, B. K. (2020). Santati parikshan ke madhyam se dudharu pashuon ka aanuvanshik sudhar. Krishi Kiran 2020; 60-64.
Kashyap N. & Deshmukh, B. (2019). Livestock record keeping: A key to efficient genetic improvement. Vet Alumnus: 41; 45-48.
Kashyap N. & Deshmukh, B. (2019). Varsha ritu mein murgiyon mein hone wale ushmagat tanaw ke dushparinam evam nivaran. Poultry Technology, 14(5); 74-75.
Kashyap N. & Deshmukh, B. (2019). Dudharu pashuon mein Thanaila Rog Pratirodhakata ki Aanuvanshik Samiksha. Kheti Duniya 2019: 11.
Kashyap N. & Deshmukh, B. (2019). Bhartiya govanshiya pashudhan mein taap sahanshilta. Kheti Duniya 2019; 6.
Kashyap, N., Malhotra, P. & Kaur, R. (2017). Deyri pashuan te vadhere tapas de prabhaw ate dhakviyan naslan. in: Booklet 'Vadhdi aalmi tapas anusaar pashu aahar ate prabandh'. Published by: GADVASU, Ludhiana, pp 11-14.
Research Publications:
Choudhary, R. K., & Zhao, F. Q. (2022). Stem cells in mammary health and milk production. Current Stem Cell Research & Therapy, 17(3), 207-213. (NAAS-9.83)
Rana, H., Luhach, P., Singh, S., Sharma, P., Choudhary, S. & Choudhary, R. K. (2022). Caprine Cancer: Etiology, Types, and Metanalysis of 21-Years of Case Reports. EC Veterinary Science, 7, 1-9. (NAAS- awaited)
Kaur, H., Malik, Y. S, Mukhopadhyay, C. S. (2022). Biocomputational analysis of spike proteins to identify evolutionary divergence of beta-CoVs with focusing on SARS-CoV2. Indian Veterinary Journal, 98(12):22-29. (NAAS-awaited)
Kaur, M., Mukhopadhyay, C. S., Sethi, R. S, Deka, D., & Dubey, P. P.. (2022). Selecting the best combination of adjuvant and the delivery vehicle for optimizing the th1 and th2 biased responses of NDV live vaccine in indigenous Aseel chicken. Bhartiya Krishi Anusandhan Patrika, 36(3): 215-223. DOI: 10.18805/BKAP304 (NAAS-awaited)
Sandhu, Y,, Mahajan. S,, Sethi, R. S., Arora, J. S. & Mukhopadhyay, C. S. (2021). Differential karyotype profiling of three popular breeds of dogs in India. The Indian Journal of Animal Sciences, 90(11): 0367-8318. (NAAS- 6.32)
Singh, J., Dhanoa, J. K., Choudhary, R. K., Singh, A., Sethi, R. S., Kaur, S. & Mukhopadhyay, C. S. 2020. MicroRNA expression profiling in PBMCs of Indian water Buffalo (Bubalus bubalis) infected with Brucella and Johne’s disease. ExRNA, 2: 1-13 (NAAS-awaited)
Choudhary, R. K., Hundal, J. S., Wadhwa, M., Choudhary, S. & Goyal, N. (2020). Expression of lipogenic and milk protein genes in milk fat layer of a goat after dietary supplementation of omega-3 rich linseed and chia oils. Small Animal Ruminants, 185,106083 (NAAS-7.611).
Capuco, A. V. & Choudhary, R. K. (2020). Invited Review: Determinants of milk production: Understanding population dynamics in the bovine mammary epithelium. Journal of Dairy Science, 103(3):2928-2940. (NAAS- 10.03).
Saleem, A., Singh, S. P., Kumar, B. V. S., Arora, J. S., & Choudhary, R. K. (2019). Analysis of lysyl oxidase as a marker for diagnosis of canine mammary tumors. Molecular Biology Reports. 46(5): 4909-4919. (NAAS- 8.316).
Choudhary, R. K., Choudhary, S., Mukhopadhyay, C. S., Pathak, D. & Verma, R. (2019). Deciphering the transcriptome of prepubertal buffalo mammary glands using RNA sequencing. Functional & Integrative Genomics.19(2):349-362 (NAAS- 9.41).
Choudhary, S., Li, W., Bickhart, D., Verma, R., Sethi, R. S., Mukhopadhyay, C. S. & Choudhary R. K. (2018). Examination of the xanthosine response on gene expression of mammary epithelial cells using RNA-seq technology. Journal of Animal Science and Technology. 60(18); 1-12. (NAAS- 8.23).
Kaur, H., Choudhary, S., Pathak, D., Singh, O., Verma, R. & Choudhary, R. K. (2018). Immunolocalization of Musashi 1 and Fibronectin Type III Domain Containing 3B in Water Buffalo Mammary Glands. Proc. Natl. Acad. Sci., India, Sect. B Biol. Sci. 88(1); 23–32. (NAAS- NA).
Choudhary R. K., Choudhary, S., Pathak, D., Udehiya, R., Verma, R., Kaswan, S., Sharma, A., Gupta, D., Honparkhe, M. & Capuco, A. V. (2018). Evaluation of xanthosine treatment on gene expression of mammary glands in early lactating goat. Journal of Dairy Research. 85; 288-294. (NAAS- 7.90).
Choudhary, R. K., Choudhary, S. & Verma, R. (2018). In vivo response of xanthosine on gene expression of lactating Beetal goat. Molecular Biology Reports. 45(4); 581-590. (NAAS- 8.32).
Choudhary, S. & Choudhary, R. K. (2018). Rapid and efficient method of total RNA isolation from milk fat for transcriptome analysis of mammary gland. Proc. Natl. Acad. Sci., India, Sect. B Biol. Sci.89, 455–460. NAAS- awaited) (Scopus IF 1.40).
Choudhary, R. K., Choudhary, S., Pathak, D. & Verma, R. (2017). Mucin 1 aberrantly expresses in goat mammary carcinoma. Journal of Stem Cell Research & Therapeutics. 2(4): 00072. (NAAS- NA).
Manku, H. K.., Dhanoa, J. K., Kaur, S., Arora, J. S. & Mukhopadhyay, C. S. (2017). Biocomputational identification and validation of novel microRNAs predicted from bubaline whole genome shotgun sequences. Computational Biology and Chemistry, 70; 96-106. (NAAS- 8.88)
Choudhary, R. K., Kaur, H., Choudhary, S. & Verma, R. (2017). Distribution and analysis of milk fat globule and milk fat globule with crescent in Murrah buffalo and crossbred cow. Proc. Natl. Acad. Sci., India, Sect. B Biol. Sci., 87(1): 167–172. (NAAS- NA) (Scopus IF 1.40).
Choudhary, R. K. & Choudhary, S. (2016). Quantitative analysis of anisotropy of mammary ductal epithelial cells of buffalo mammary gland. EC Veterinary Science. 2(4): 171-176. (NAAS-awaited).
Singh, J., Mukhopadhyay, C. S., Kaur, S., Malhotra, P., Sethi, R. S., & Choudhary, R. K. (2016). Identification of the MicroRNA Repertoire in TLR-Ligand Challenged Bubaline PBMCs as a Model of Bacterial and Viral Infection. PLoS One. 11(6); e0156598. (NAAS- 9.24).
Choudhary, R. K., Choudhary, S., & Verma, R., (2016). CD10 is a marker of goat mammary cancer. EC Veterinary Science. 01 EC01O.01: 01-02. (NAAS: NA).
Choudhary, R. K., Choudhary, S., Kaur, H. & Pathak, D. (2016). Expression of putative stem cell marker, Hepatocyte nuclear factor 4 alpha, in the mammary gland of water buffalo. Animal Biotechnology, 27(3): 182-89. (NAAS- 8.28).
Review Articles:
Choudhary, R. K. (2022). Caprine Cancer: Etiology, Types, and Metanalysis of 21-Years of Case Reports. EC Veterinary Science, 7, 2000-2021. (NAAS- awaited)
Sahoo, B., Choudhary, R. K., Sharma, P., Choudhary, S. & Gupta, M. K. (2021). Significance and relevance of spermatozoal RNAs to male fertility in livestock. Frontiers in Genetics, 12; 7681-7696. (IF-4.599).
Choudhary, R. K. & Zhao, F. Q. (2022). Invited Review: Stem cells in mammary health and milk production. Current Stem Cell Research & Therapy. 17(3); 207-213. (IF-3.828)
Choudhary, R. K. & Zhao, F-Q. (2021). Editorial: Re-Evaluation of Milk Components and Stem Cells. Acta Scientific Veterinary Sciences 3.1; 01-02. (IF-0.581)
Dhanoa, J. K., Verma, R., Sethi, R. S., Arora, J. S. & Mukhopadhyay, C. S. (2019). Biogenesis and biological implications of isomiRs in mammals-a review. ExRNA, 1(1); 1-8. (NAAS- NA)
Dhanoa, J. K., Sethi, R. S., Verma, R., Arora, J. S. & Mukhopadhyay, C. S. (2018). Long non-coding RNA: its evolutionary relics and biological implications in mammals: a review. Journal of animal science and technology, 60(1); 1-10. (NAAS- 8.23)
Dhanoa, J. K., Mukhopadhyay, C. S. & Arora, J. S. (2016). Y-chromosomal genes affecting male fertility: A review. Veterinary World, 9(7), 783. DOI: 10.14202/vetworld.2016.783-791. (NAAS- 4.83)
Hussain, S., Mukhopadhyay, C. S. & Arora, J. S. (2014). Applications and implications of mammalian antimicrobial peptides-a review. Agricultural Reviews, 35(4). DOI. 10.5958/0976-0741.2014.00918.0. (NAAS- 4.63)
Tokas, J., Mukhopadhyay, C. S., & Verma, A. (2011). Self-renewal of spermatogonial stem cells: the most promising multipotent cells-a review. Veterinary World, 4(5); 234. (NAAS- 4.83)
Mukhopadhyay, C. S., Tokas, J., & Mathur, P. D. (2011). Prospects and ethical concerns of embryonic stem cells research-a review. Veterinary World, 4(6); 281. (NAAS- 4.83)
Mukhopadhyay, C. S., Kumar, R., & Brah, G. S. (2010). Gallinacin and fowlicidin: two promising antimicrobial peptides in chickens: a review. Veterinary World, 3(6), 297-300. (NAAS- 4.83)
Edited and authored books:
Mukhopadhyay, C. Sekharx, Choudhary, R. Kumar, & Iquebal, M. Asif. (2018). Basic applied bioinformatics: a beginner's guide for students. First edition. Hoboken, New Jersey: Wiley. ISBN: 9781119244332
Singh, U., & Kumar, S., Mukhopadhyay, C. S., Deb, R., Alyethodi, R. R., Alex, R., Dhama, K. & Ganguly, I. (2015). Bioinformatic Approaches for Livestock Genome Analysis. Satish Serial Publishing House.
Choudhary, R. K. & Choudhary, S. (2021). Stem Cells in Veterinary Science. Springer Singapore Hard Cover ISBN: 978-981-16-3463-5.
Compendium:
E-Compendium Editing: e-Compendium of the online “Training on artificial intelligence for students”, organized during January to March 2022. Eds. Kalambhe, D., Panwar, H., Dash, S.K., Sharma, A. & Mukhopadhyay, C. S. 2022. Published under Institutional Development Plan (IDP), Guru Angad Dev Veterinary and Animal Sciences University, Ludhiana, Punjab. Edition: I. ISBN: 978-93-5636-707-4 (Editor)
Choudhary R. K. & Malik, Y. S. (2021). Biotechnological Approaches in Animal Research and Disease Diagnosis. College of Animal Biotechnology, Guru Angad Dev Veterinary and Animal Sciences University Ludhiana, Punjab. ISBN 978-93-5566-112-8. Pp. 106- (Editor)
Malik, Y. P. S., Sethi, R. S. Narang, D., Choudhary, R. K., Pathak, D., Mehta, N. & Shanthanagouda, A. H. (2022). Transforming Livestock Economy through Innovations in Immunology and Biotechnology: A Souvenir-cum-Compendium. College of Animal Biotechnology, Guru Angad Dev Veterinary and Animal Sciences University Ludhiana, Punjab. ISBN 978-93-5619-958-3. Pp. 250. (Editor)
Malik, Y. S., Mukhopadhyay, C. S., Choudhary, R. K., Kashyap, N. & Sunil Kumar, B. V. (2022). Training manual for a six-weeks short course on Bioinformatics held at the College of Animal Biotechnology in hybrid mode in July 2022. Pp. 108 (Editor)
Book Chapters:
Choudhary, S., Malik, Y. S., & Choudhary, R. K. (2022). Therapeutic potential of stem cell secretome, in Recent Advances in Stem Cell Biology and Therapeutics. Bhartiya, D. & Chandra, V. (Eds.) Issue 29, Publishers: Indian Society for the Study of Reproduction and Fertility. Page 21-23. ISSN 2395-2806
Choudhary, R. K. (2021). Overview of Stem Cells and Their Applications in Veterinary Medicine. In: R. K. Choudhary & S. Choudhary (eds.) Stem Cells in Veterinary Science. Springer, Singapore. https://doi.org/10.1007/978-981-16-3464-2_1
Kaur, T. P., Verma, R. & Choudhary, R. K. (2021). Introduction to Mammary Gland and Its Cell Types. In: R. K. Choudhary & S. Choudhary (eds.) Stem Cells in Veterinary Science. Springer, Singapore. https://doi.org/10.1007/978-981-16-3464-2_2
Choudhary R. K. (2021). Milk and Milk-Derived Stem Cells. In: R. K. Choudhary & S. Choudhary (eds.) Stem Cells in Veterinary Science. Springer, Singapore. https://doi.org/10.1007/978-981-16-3464-2_8
Choudhary R.K. 2021 Identification of Species-Specific Stem Cells and Challenges. In: R. K. Choudhary & S. Choudhary (eds.) Stem Cells in Veterinary Science. Springer, Singapore. https://doi.org/10.1007/978-981-16-3464-2_19
Choudhary R. K. & Choudhary, S. (2021). Regulations of Animal Cell-Based Drugs in Veterinary Regenerative Medicine. In: R. K. Choudhary & S. Choudhary (eds.) Stem Cells in Veterinary Science. Springer, Singapore. https://doi.org/10.1007/978-981-16-3464-2_20
Mukhopadhyay, C. S., Kumar, A. & Deb. R. (2020). Cattle genomics: genome projects, current status, and future applications. In: Y. S. Malik, D. Barh, V. Azevedo & S. M. P. Khurana (eds.). Genomics and Biotechnological Advances in Veterinary, Poultry, and Fisheries. Academic Press, Elsevier. First Edition. ISBN: 9780128163528. PP. 3-28
Deb, R., Mukhopadhyay, C. S., Sengar, G. S., da Cruz, A. S., Silva, D. C., Pinto, I. P., Minasi, L. B., Costa, E. O. A. & da Cruz, A. D. (2020). Genetic markers for improving farm animals. In: Y. S. Malik, D. Barh, V. Azevedo & S. M. P. Khurana (eds.). Genomics and Biotechnological Advances in Veterinary, Poultry, and Fisheries. Academic Press, Elsevier. First Edition. ISBN: 9780128163528. PP. 107-129
Chawla, R., Arora, J, Dubey, R. K, Mukhopadhyay, C. S. (2018). Omics approaches and applications in dairy and food processing technology. In: D. Barh & V. Azevedo (eds.). Omics Technologies and Bio-Engineering. Elsevier Science & Technology Publishers. 271-295. ISBN: 9780128046593
Mukhopadhyay, C. S., Verma, R., & Singh, J. (2017). Extraction and qPCR-based detection of miRNAs from cultured PBMCs of bubaline origin. [Mossman, Karen] In: Innate Antiviral Immunity: Methods and Protocols. Humana Press, Springer New York, USA; Series Vol. 1656; pp. 89-102 eBook ISBN: 978-1-4939-7237-1, Hardcover ISBN: 978-1-4939-7236-4, DOI 10.1007/978-1-4939-7237-1; Series ISSN: 1064-3745.
Iquebal, M. A., Jaiswal, S., Mukhopadhyay, C. S., Sarkar, C., Rai, A. & Kumar, D. (2015). Applications of Bioinformatics in Plant and Agriculture. In: D. Barh, M.S. Khan & E. Davies. PlantOmics: The Omics of Plant Science, Edition: First, Springer Publications. pp.755-789 DOI: 10.1007/978-81-322-2172-2_27. ISBN 978-81-322-2172-2
Mukhopadhyay, C. S. (2015). Designing and In-silico quality checking of PCR primers. In: U. Singh, S. Kumar, C. S. Mukhopadhyay, R. Deb, R. R. Alyethodi, R. Alex, K. Dhama, & I. Ganguly (eds.). Bioinformatic Approaches for Livestock Genome Analysis. Satish Serial Publishing House, Delhi, India. Pp. 23-76. ISBN: 9789384053017.
Mukhopadhyay, C. S. & Osahan, S.S. (2015). Sequence alignment: concepts and methods. In: U. Singh, S. Kumar, C. S. Mukhopadhyay, R. Deb, R. R. Alyethodi, R. Alex, K. Dhama, & I. Ganguly (eds.). Bioinformatic Approaches for Livestock Genome Analysis. Satish Serial Publishing House, Delhi, India. Pp. 77-112. ISBN: 9789384053017.
Mukhopadhyay, C. S. (2015). Submitting Nucleotide sequence to Bankit. In: U. Singh, S. Kumar, C. S. Mukhopadhyay, R. Deb, R. R. Alyethodi, R. Alex, K. Dhama, & I. Ganguly (eds.). Bioinformatic Approaches for Livestock Genome Analysis. Satish Serial Publishing House, Delhi, India. Pp. 113-136. ISBN: 9789384053017.
Mukhopadhyay, C. S. & Osahan, S.S. (2015). Molecular phylogeny: basics, methods, and applications. In: U. Singh, S. Kumar, C. S. Mukhopadhyay, R. Deb, R. R. Alyethodi, R. Alex, K. Dhama, & I. Ganguly (eds.). Bioinformatic Approaches for Livestock Genome Analysis. Satish Serial Publishing House, Delhi, India. Pp. 137-156. ISBN: 9789384053017.
Sarika, M., Iquebal, A., Mukhopadhyay, C. S., Koringa, P. G., Rai, A., Joshi, C. G. & Kumar, D. (2015). Genome annotation in Prokaryotes and Eukaryotes. In: U. Singh, S. Kumar, C. S. Mukhopadhyay, R. Deb, R. R. Alyethodi, R. Alex, K. Dhama, & I. Ganguly (eds.). Bioinformatic Approaches for Livestock Genome Analysis. Satish Serial Publishing House, Delhi, India. Pp. 247-278. ISBN: 9789384053017.
Mukhopadhyay, C. S. & Kumar, D. (2013). Applications of SNP-Chip in Bovine Selection. In: U. Singh, S. Kumar, A. Kumar, R. Deb & A. Sharma (eds.). Advances in Cattle Research. Satish Serial Publishing House, Delhi-110033, India. Pp. 1-18. ISBN: 9789381226421
Mukhopadhyay, C. S., Dubey, P.P. & Gupta, A. K. (2013). Assessment of Sperm Chromatin Compactness and Integrity in Mammalian Semen Sample. In. C. V. Singh & R. S. Barwhal (eds.). Genetic Improvement of Livestock and Poultry. New India Publishing Agency, New Delhi. Pp. 275-283. ISBN: 9381450821; 9789381450826.
